geneAbundance [g] v.2.0.0

Long form: geneAbundance() Short form: g()

geneAbundance(ns:v) or g(ns:v) denotes the abundance of the gene designated by the value v in the namespace ns. geneAbundance() terms are used to represent the DNA encoding the specified gene. geneAbundance() is considered decreased in the case of a homozygous or heterozygous gene deletion, and increased in the case of a DNA amplification mutation. Events in which a protein binds to the promoter of a gene can be represented using the geneAbundance() function.

Function Signatures

geneAbundance(NSArg, loc()?, var()*)

  1. Namespace argument of following type(s): Gene

  2. Zero or one of each function(s): location

  3. Zero or more of each function(s): variant

geneAbundance(fus(), loc()?, var()*)

  1. One of following function(s): fusion

  2. Zero or one of each function(s): location

  3. Zero or more of each function(s): variant

Examples

p53 protein binds the CDKN1A gene

complex(p(HGNC:TP53), g(HGNC:CDKN1A))
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